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• Batch conversion of ID to gene symbol
  I'm an old school molecular biologist who studies gene expression but is quite new to bio-computi...
• How To Transfer Gene Id Into Protein Id
  Hi, I have some refseq gene id, like NM_*****. How can I transfer these gene id into protein id...
• I can't find RefSeq ID in Text Manipulation > UniProt ID mapping and retrieval
  Hi, I am trying to covert RefSeq ID to gene name using Text Manipulation > UniProt ID mapping ...
• RefSeq Annotation using SnpEff
  Hello, I am working with human whole genome sequence. I have called variant using samtools and I...
• Entrez Id To Refseq Or Gene Symbol
  Giovanni: The conversion table can be found at NCBI's FTP site for Entrez gene. ftp://ftp.ncbi....
• gene Symbol from cuffdiff output
  Hi. I received output from cuffdiff which included gene_id, gene and locus for each differential...
• Join GEO2R microarray data and ChIP seq data using gene symbol
  Using GEO2R in GEO Omnibus, I have analyzed public available data and exported deferentially regu...
• Deseq2 give me sequence instead of gene ID
  Hi everyone, I am using deseq2 to test differential expression from salmon files (TPM) with a r...
• Cufflinks analysis remains in que without running
  Hi Team, Loving Galaxy! When I run my data, I use the same protocol for most all datasets. Howev...
• FeatureCounts from GUI galaxy
  I ran featurecounts from Galaxy GUI – it didn’t recognized genomic annotation UCSC from history. ...
• Annotation file that contains XLOC_ Cuffdiff Gene_ID and Gene Symbol etc.
  I am looking for a stand alone annotation file for mm10 genome that contains all Cuffdiff XLOC_ G...
• Ensembl numbers to gene symbols
  Hello, I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential...
• Retaining Or Reclaiming Bed Ids
  Hi! Having provided a name (field 4) in a UCSC bed file ( http://www.genome.ucsc.edu/FAQ/FAQform...
• Multiple mapping to one gene ID using Cufflinks in Galaxy
  I am currently running RNA-seq analysis on rat mRNA in Galaxy using a flow that uses TopHat2 then...
• convert alignID to gene symbol
  Hello, I have been using Galaxy to determine genes from chromosome positions. I upload large BED...
• gene Id to gene name
  I did DEseq2 on galaxy for my samples after STAR alignment. I got the report and found the first...
• Add RefSeq ID to VCF file
  Hello! I am working with whole genome sequence of homo sapiens. I aligned my sample data with hg3...
• Mutliple UCSC gene names in RStudio Data Table
  Hi there, I am using the cummeRbund package in R Studio on my personal computer to analyze diffe...
• converty cuff id to gene id
  Hi, wondering if anyone could give me some clues how to convert cuff gene id to normal gene id so...
• Fetch Closest Feature On Data
  Hi, Is there a way of returning accession number or IDs using "Fetch closest feature on data" in...