Annotation file that contains XLOC_ Cuffdiff Gene

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Question: Annotation file that contains XLOC_ Cuffdiff Gene_ID and Gene Symbol etc.

2.4 years ago by

dklinkebiel • 0

dklinkebiel • 0 wrote:

I am looking for a stand alone annotation file for mm10 genome that contains all Cuffdiff XLOC_ Gene_ID's with other gene identifiers such as gene symbol, locus, name etc. Thanks

Dave

cufflinks • 693 views

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modified 2.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.4 years ago by dklinkebiel • 0

2.4 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Cuffdiff produces output with run-specific gene/transcript identifiers. However, if you use an annotation file with the Cuffdiff run, those identifiers will be incorporated into the output. iGenomes is a good choice for mm10. Unpack the tar.gz file locally, then upload just the genes.gtf file to Galaxy: http://support.illumina.com/sequencing/sequencing_software/igenome.html

Prior Q&A in the right side bar has more help/links >>>

Best, Jen, Galaxy team

ADD COMMENT • link written 2.4 years ago by Jennifer Hillman Jackson ♦ 25k

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