Question: Annotation file that contains XLOC_ Cuffdiff Gene_ID and Gene Symbol etc.
gravatar for dklinkebiel
2.4 years ago by
dklinkebiel0 wrote:

I am looking for a stand alone annotation file for mm10 genome that contains all Cuffdiff XLOC_ Gene_ID's with other gene identifiers such as gene symbol, locus, name etc. Thanks


cufflinks • 693 views
ADD COMMENTlink modified 2.4 years ago by Jennifer Hillman Jackson25k • written 2.4 years ago by dklinkebiel0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Cuffdiff produces output with run-specific gene/transcript identifiers. However, if you use an annotation file with the Cuffdiff run, those identifiers will be incorporated into the output. iGenomes is a good choice for mm10. Unpack the tar.gz file locally, then upload just the genes.gtf file to Galaxy:

Prior Q&A in the right side bar has more help/links >>>

Best, Jen, Galaxy team

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour