Question: Fetch Closest Feature On Data
0
Steve Taylor • 240 wrote:
Hi,
Is there a way of returning accession number or IDs using "Fetch
closest feature on data" in Galaxy? When I tried this function, it
returned a list of coordinates and a temporary id (the first four
columns are the input data).
chr16 8038 8480 16.1 0.09567793 chr16 12632 13347
16.2 0.06949871
chr16 12632 13347 16.2 0.06949871 chr16 8038 8480
16.1 0.09567793
chr16 12632 13347 16.2 0.06949871 chr16 45006 46378
16.3 0.52806085
I was expecting it to work in a similar way to the Bioconductor ACME
function findClosestGene where I get the nearest RefSeq gene
accession.
Kind regards and thanks for any help,
Steve
Medical Sciences Division
Weatherall Institute of Molecular Medicine/Sir William Dunn School
Oxford University