Question: Error Message When Importing Gc Content
gravatar for Ross Hardison
12.1 years ago by
Ross Hardison270
United States
Ross Hardison270 wrote:
When I use the Table Browser proxy in Galaxy to import data on "GC content in 5bp intervals", I get the data I want (in wiggle format). However, the information associated with the query in Galaxy says: 3: UCSC: gc5Base (chr16:1-500000) error, format: wig, database: hg17 Info: Errors: (line 100010)--------------------------------------------------------------- -- 100013)--------------------------------------------------------------- -- As far as I can tell, the data are there and are OK (it converts from wiggle to BED OK, and the expected 100,000 lines are present). It is disconcerting to users to get the error message. Thanks, Ross Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology The Pennsylvania State University 304 Wartik Laboratory University Park, PA 16802 e-mail: phone: 814-863-0113 FAX: 814-863-7024
galaxy • 781 views
ADD COMMENTlink modified 12.1 years ago by Dan Blankenberg130 • written 12.1 years ago by Ross Hardison270
gravatar for Dan Blankenberg
12.1 years ago by
Dan Blankenberg130 wrote:
Ross, UCSC reports that this query is truncated, but the error message provided by Galaxy in these cases is pretty worthless. I have changed the error reported by Galaxy in this case to hopefully be more informative than just dashed lines. Let me know if you have another sugestion. The change is live in the test.g2. Dan
ADD COMMENTlink written 12.1 years ago by Dan Blankenberg130
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