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Question: WIG file from MACS2
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gravatar for katherinedixon4
4.4 years ago by
katherinedixon4 • 10
Canada
katherinedixon4 • 10 wrote:

Hi,

I have been using MACS2 in Cistrome to call peaks from ChIP-seq data. It appears as though it's not possible to generate a wiggle file using MACS2, whereas there is an option to do so in MACS (within the Cistrome platform). I just wanted to make sure my understanding is correct?

Thank you!
cistrome macs2 • 1.9k views
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modified 4.4 years ago by Bjoern Gruening ♦ 5.1k • written 4.4 years ago by katherinedixon4 • 10
1
gravatar for Bjoern Gruening
4.4 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

I'm not sure if you are talking about the recent MACS2 wrapper developed here: https://github.com/bgruening/galaxytools/tree/master/macs2

I'm not aware of that option if it still exists in MACS2 I will integrate it. Can you help me and point me to the documentation about that option?

Thanks,

Bjoern
ADD COMMENT • link written 4.4 years ago by Bjoern Gruening ♦ 5.1k
0
gravatar for Jennifer Hillman Jackson
4.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

We can wait and see if the Cistrome team replies here, but they may not be active quite yet. Email them direct about questions regarding the tool behavior specific to their instance is still probably the best route. Feel free to post back there, though! 

Best, Jen, Galaxy team
ADD COMMENT • link written 4.4 years ago by Jennifer Hillman Jackson ♦ 25k
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