Question: Read count across interval
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gravatar for michael.ridley6
19 months ago by
michael.ridley60 wrote:

Hello, I'm trying to retrieve a score for ATAC-seq (similar processing to ChiP-seq data), at an interval. The closest I can get is the tag coverage, however this does not correlate with wiggle files, presubably because the intervals are <300bp and the tags are shifted either side of the strand (this is single end sequencing).

Is there a way to get a either a shifted tag count, or extract data from a wiggle file over an interval?

atac-seq bed macs chip-seq • 519 views
ADD COMMENTlink written 19 months ago by michael.ridley60
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