Question: Read count across interval
gravatar for michael.ridley6
21 months ago by
michael.ridley60 wrote:

Hello, I'm trying to retrieve a score for ATAC-seq (similar processing to ChiP-seq data), at an interval. The closest I can get is the tag coverage, however this does not correlate with wiggle files, presubably because the intervals are <300bp and the tags are shifted either side of the strand (this is single end sequencing).

Is there a way to get a either a shifted tag count, or extract data from a wiggle file over an interval?

atac-seq bed macs chip-seq • 573 views
ADD COMMENTlink written 21 months ago by michael.ridley60
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 98 users visited in the last hour