Question: Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
0
gravatar for daniel.tonge
21 months ago by
daniel.tonge10
daniel.tonge10 wrote:

Good afternoon,

I keep getting the following error when trying to visualise data using galaxy main - this also occurs if I try to select view in UCSC / Ensemble / IGB;

Conflict

There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'

Any help would be very much appreciated.

Dan

rna-seq • 820 views
ADD COMMENTlink modified 17 months ago by annen0 • written 21 months ago by daniel.tonge10
0
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

I am unable to reproduce this with a general test history. Would you please send in a shared link for the history containing this BAM dataset? Also include the dataset number and a link to this Biostars post in the comments. Email to galaxy-bugs@lists.galaxyproject.org.

How to share: https://wiki.galaxyproject.org/Learn/Share

Thanks, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson24k
0
gravatar for daniel.tonge
21 months ago by
daniel.tonge10
daniel.tonge10 wrote:

Link emailed as requested. Many thanks for your prompt reply.

Best wishes,

D

ADD COMMENTlink written 21 months ago by daniel.tonge10
0
gravatar for annen
17 months ago by
annen0
annen0 wrote:

Hi-

I am having the exact same problem. Did yours ever get resolved?

Thanks, Anne

ADD COMMENTlink written 17 months ago by annen0

It was due to a rare cluster issue that still may occur. There are two things to try:

  • First attempt to reset the metadata on the dataset. Do this by clicking on the pencil icon for the dataset to reach the Edit Attributes form. On the first tab is a button named "Auto-detect". Click this and allow the dataset to resolve, then try to use it.

  • If this fails, then either reload the BAM dataset (if uploaded) or re-run the job that created it.

Thanks, Jen, Galaxy team

ADD REPLYlink modified 17 months ago • written 17 months ago by Jennifer Hillman Jackson24k
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