Question: Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
0
gravatar for daniel.tonge
2.0 years ago by
daniel.tonge10
daniel.tonge10 wrote:

Good afternoon,

I keep getting the following error when trying to visualise data using galaxy main - this also occurs if I try to select view in UCSC / Ensemble / IGB;

Conflict

There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'

Any help would be very much appreciated.

Dan

rna-seq • 945 views
ADD COMMENTlink modified 20 months ago by annen0 • written 2.0 years ago by daniel.tonge10
0
gravatar for Jennifer Hillman Jackson
2.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

I am unable to reproduce this with a general test history. Would you please send in a shared link for the history containing this BAM dataset? Also include the dataset number and a link to this Biostars post in the comments. Email to galaxy-bugs@lists.galaxyproject.org.

How to share: https://wiki.galaxyproject.org/Learn/Share

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.0 years ago by Jennifer Hillman Jackson25k
0
gravatar for daniel.tonge
2.0 years ago by
daniel.tonge10
daniel.tonge10 wrote:

Link emailed as requested. Many thanks for your prompt reply.

Best wishes,

D

ADD COMMENTlink written 2.0 years ago by daniel.tonge10
0
gravatar for annen
20 months ago by
annen0
annen0 wrote:

Hi-

I am having the exact same problem. Did yours ever get resolved?

Thanks, Anne

ADD COMMENTlink written 20 months ago by annen0

It was due to a rare cluster issue that still may occur. There are two things to try:

  • First attempt to reset the metadata on the dataset. Do this by clicking on the pencil icon for the dataset to reach the Edit Attributes form. On the first tab is a button named "Auto-detect". Click this and allow the dataset to resolve, then try to use it.

  • If this fails, then either reload the BAM dataset (if uploaded) or re-run the job that created it.

Thanks, Jen, Galaxy team

ADD REPLYlink modified 20 months ago • written 20 months ago by Jennifer Hillman Jackson25k
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