Question: Bioblend - Getting all parameters for a Galaxy tool ?
1
gravatar for lindfors.erno
2.0 years ago by
Germany
lindfors.erno30 wrote:

Hi all,

I would like to get all parameters that a Galaxy tool has.

More specifically, I have managed to get all tool panels and tools by using the following code snippet.
import sys
from bioblend.galaxy import GalaxyInstance
from bioblend.galaxy.tools import ToolClient
galaxyInstance = GalaxyInstance(url=GALAXY_URL, key=API_KEY)
toolClient = ToolClient(galaxyInstance)
toolPanels = toolClient.get_tool_panel()
for toolPanel in toolPanels:
    tools = toolPanel['elems']

    
Next, I would like to get all parameters that each tool has, something like this:
    for tool in tools:
      tool.get_parameters()

Is there anyway to do it?

bioblend galaxy • 527 views
ADD COMMENTlink written 2.0 years ago by lindfors.erno30

Recently managed to google a solution:
    for tool in tools:
      toolShow = toolClient.show_tool(tool_id=tool['id'], io_details=True)
      inputParams = toolShow['inputs']

ADD REPLYlink written 2.0 years ago by lindfors.erno30
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