Question: Manpulating BAM using Galaxy
gravatar for jjooliver
2.7 years ago by
jjooliver0 wrote:

How does one manipulate bam files using Galaxy tools to meet the objective of comparing ten bam files from three different populations (Chromosome 20 files obtains from 1000 Genome Project)? All files have been imported into Galaxy, but we are having problems getting the right tools to use to identify SNPs within and among the groups. As well as, to generate a cluster analysis with these files. If anyone can help with this we would greatly appreciate it. If you would like to see what has been done we can share the information with you. Thank you so much,

ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by jjooliver0
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


See the variant analysis section of this wiki to get started:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson25k
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