Question: picard collectwgsmetrics error
gravatar for hkhoja
2.2 years ago by
United States
hkhoja0 wrote:


Hi..I am trying to use the picard collectwgsmetrics on a bam file generated from a whole genome sequencing with a hg38 as the reference sequence. I keep getting the following error; Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: Exception in thread "main" java.lang.NullPointerException at htsjdk.samtools.reference.ReferenceSequenceFileWalker.get(  

Any ideas on what it means and how I can avoid it?

Thank you




software error • 716 views
ADD COMMENTlink written 2.2 years ago by hkhoja0


This same problem was reported just a few days ago and our team is reviewing. Feedback/resolution may occur after the holiday.

Thank you for reporting the problem, Jen, Galaxy team

ADD REPLYlink written 2.2 years ago by Jennifer Hillman Jackson24k
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