Question: Error message when using the ValidateSamFile tool (Picard) in summary mode
gravatar for nhs
2.6 years ago by
European Union
nhs0 wrote:


After the update the Picard tool "ValidateSamFile" in the summary output mode returned the following error (verbose works fine).Do I need to adjust any settings?


236 ValidateSamFile on data 232: BAM validation summary empty formattxtdatabasehg38 Warning: Exit code 1 () Picked up _JAVA_OPTIONS: ERROR: 'MAX_OUTPUT=100' is not a valid value for Type. USAGE: ValidateSamFile [options] Documentation:

software error galaxy bam • 754 views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by nhs0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


I am able to reproduce the error. An issue ticket has been created here that you can follow for the correction:

Thanks for reporting the problem. Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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