Hi,
I'm new to Galaxy and have minimal experience with Linux. I have installed Galaxy on a local computer and installed FastQC 0.11.2 (Galaxy Version 0.67). The FastQC showed up as successfully installed in the installed tool manager, but when I tried to run it, it gave me Dataset Generation Errors with the following error message:
Fatal error: Exit code 1 ()
/bin/sh: 1: fastqc: not found
Traceback (most recent call last):
File "/home/genomics/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/a00a6402d09a/fastqc/rgFastQC.py", line 165, in <module> fastqc_runner.run_fastqc()
File "/home/genomics/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/a00a6402d09a/fastqc/rgFastQC.py", line 137, in run_fastqc subprocess.check_call(self.command_line, shell=True)
File "/usr/lib/python2.7/subprocess.py", line 540, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command 'fastqc --outdir /home/genomics/galaxy/database/jobs_directory/000/11/dataset_16_files --quiet --extract -f fastq NG-9686_CLOS3_6h_lib150881_5052_3_1.fastq' returned non-zero exit status 127
Could anyone help me fix this issue, please?
Thanks!
