I successfully uploaded a hg19.fa (3GB) file onto my local Galaxy.
Am i able to use this file as a reference genome build (dbkey) to perform visualization of a .bam file?
I am doing it right now but it seems like there are some erroneous error..
This is the image for adding custom build ( https://www.dropbox.com/s/i69dmulcaz9ojhr/adding%20custom_build.png?dl=0 )
This is the image that shows I successfully uploaded the 3.2GB hg19.fa file ( https://www.dropbox.com/s/yd90ezyh2lqovt6/hg19.png?dl=0 )
These are the errors ( https://www.dropbox.com/s/9twx8k8mrgbn28x/error.png?dl=0 )...
/home/user/galaxy-dist/database/job_working_directory/000/81/galaxy_81.sh: 17: /home/user/galaxy-dist/database/job_working_directory/000/81/galaxy_81.sh: Syntax error: "(" unexpected
/home/user/galaxy-dist/database/job_working_directory/000/79/galaxy_79.sh: 17: /home/user/galaxy-dist/database/job_working_directory/000/79/galaxy_79.sh: Syntax error: "(" unexpected
When i drill into the directory of /home/user/galaxy-dist/database/job_working_directory/000/ , it does not have 81 or 79 as a folder. The only available folder is just 28 and 29 (as shown here: https://www.dropbox.com/s/m9d4o86ymhynhab/28_29.png?dl=0 ).
Anyone happen to know the rational behind it?