Question: Add NCBI BLAST
0
gravatar for cbb.chintan
3.1 years ago by
cbb.chintan10
United States
cbb.chintan10 wrote:

I am new to galaxy.

I did not configured my galaxy on any local machine.

I want to add NCBI BLAST +++ to my tools in homepage of galaxy.

 

How i can do it?

 

 

 

 

ncbi blast galaxy • 922 views
ADD COMMENTlink modified 3.1 years ago by Jennifer Hillman Jackson25k • written 3.1 years ago by cbb.chintan10
1
gravatar for Bjoern Gruening
3.1 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi,

have a look at this paper that describes the BLAST+ integration in Galaxy: http://www.gigasciencejournal.com/content/4/1/39

If you are admin you can install all wrappers via the Tool Shed. If you are not an admin you should contact them.

Cheers,

Bjoern 

ADD COMMENTlink written 3.1 years ago by Bjoern Gruening5.1k

Hello,

I am facing other problem now. I installed galaxy as local galaxy using ubuntu in virtual box. I followed the james video and stuck in between. I lunched command sh run.sh and i got output as ~ middleware: /plugins/visualizations/scatterplot/static, ./config/plugins/visualizations/scatterplot/static galaxy.queue_worker INFO 2015-09-09 12:00:59,171 Binding and starting galaxy control worker for main Starting server in PID 4215. serving on http://127.0.0.1:8080 <http: 127.0.0.1:8080="">. then i moved to http://127.0.0.1:8080 <http: 127.0.0.1:8080=""> in my chrome and logged using my email id and password.

In video it shows that there will another tab "Admin" on top in line of Help etc., but i did not able to see like that even i refreshed many times.

Please find attached screenshot

Best, Chintan

ADD REPLYlink written 3.1 years ago by cbb.chintan10

You will only see the admin tab if you configure yourself as administrator. Edit the *admin_users* setting in config/galaxy.ini.

ADD REPLYlink written 3.1 years ago by Bjoern Gruening5.1k

Thank you for reply. You are correct i had already added admin_users = cbb.chintan@gmail.com

I have also attached galaxy.ini file that is available in config folder.

please find attachment.

thanks, Chintan

ADD REPLYlink written 3.1 years ago by cbb.chintan10
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