Question: Re: [Galaxy-Bugs] Gi Errors In The Megablast Table Of Results ?
0
Guru Ananda • 60 wrote:
Dear Sandrine,
Thanks for pointing out this issue.
The BLAST databases we have on Galaxy are from last year, while those
on
NCBI website are the latest (Jan 2012). As pointed out on NCBI website
(
http://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html), it appears that
each
time any change is made to a sequence/database, GI numbers change as
well.
This is perhaps why you're observing discrepancies in GI numbers and
lengths between megablast outputs on Galaxy and NCBI. I'm currently in
the
process of downloading the latest BLAST databases from NCBI, and I'll
let
you know when they're available for use on Galaxy.
Thanks for your patience,
Guru
Galaxy team.
On Wed, Nov 9, 2011 at 8:03 AM, Sandrine Hughes <sandrine.hughes@ens- lyon.fr="" --="" graduate="" student,="" bioinformatics="" and="" genomics="" makova="" lab="" galaxy="" team="" penn="" state="" university="" 505="" wartik="" lab="" university="" park="" pa="" 16802="" guru@psu.edu<="" div="">
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modified 6.8 years ago
by
Peter Cock • 1.4k
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written
6.8 years ago by
Guru Ananda • 60
