Hello,
I installed galaxy locally and was successful in register user, become adminstrator, uploading files, install tools, create a library. However after I shut down the program, it cannot re-start. I entered command sh run.sh and the startup fails here:
Traceback (most recent call last):
File "/home/vero/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 44, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/vero/galaxy-dist/lib/galaxy/app.py", line 82, in __init__
self._configure_toolbox()
File "/home/vero/galaxy-dist/lib/galaxy/config.py", line 702, in _configure_toolbox
self.toolbox = tools.ToolBox( tool_configs, self.config.tool_path, self )
File "/home/vero/galaxy-dist/lib/galaxy/tools/__init__.py", line 143, in __init__
self.load_integrated_tool_panel_keys()
File "/home/vero/galaxy-dist/lib/galaxy/tools/__init__.py", line 376, in load_integrated_tool_panel_keys
tree = parse_xml( self.integrated_tool_panel_config )
File "/home/vero/galaxy-dist/lib/galaxy/util/__init__.py", line 174, in parse_xml
tree = ElementTree.parse(fname)
File "/home/vero/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg/elementtree/ElementTree.py", line 859, in parse
tree.parse(source, parser)
File "/home/vero/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg/elementtree/ElementTree.py", line 583, in parse
parser.feed(data)
File "/home/vero/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg/elementtree/ElementTree.py", line 1242, in feed
self._parser.Parse(data, 0)
ExpatError: not well-formed (invalid token): line 117, column 38
I only install python-dev because i need it for install cutadapt dependencies. And I only modify the galaxy.ini to set email for the administrator and to set the directory for tool dependencies.
Thank you for your help in starting galaxy again
Veronica
