Hello! I am trying to install ngs tools 0.1.8 to galaxy (via fedora 4.0.4) and am getting the following error:
Error Traceback (most recent call last):
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/bin/pip", line 8, in <module>
load_entry_point('pip==1.3.1', 'console_scripts', 'pip')()
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/__init__.py", line 149, in main
return command.main(args[1:], options)
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/basecommand.py", line 181, in main
logger.fatal('Storing complete log in %s' % log_fn)
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/log.py", line 48, in fatal
self.log(self.FATAL, msg, *args, **kw)
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/log.py", line 75, in log
backwardcompat.fwrite(consumer, rendered)
File "/home/neurobd03/galaxy/dependency_dir/ngs-tools/0.1.8/cjav/package_ngs_tools_0_1_8/6106ecedea92/venv/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/backwardcompat/__init__.py", line 88, in fwrite
f.write(s)
ValueError: I/O operation on closed file
I am also getting this error with centOS. Has anyone else had this problem? Any suggestions?
Jimmaline
