Question: Why Is ./Tools/Sr_Mapping/Bowtie_Color_Wrapper.Xml Not Implemented By Default?
gravatar for Kevin
8.3 years ago by
Kevin150 wrote:
Hi, I see that the public galaxy at has a few differences with a local installation in that some tools are not implemented as well. for e.g. ./tools/sr_mapping/bowtie_color_wrapper.xml May I know if there's a reason for this? Cheers Kevin
alignment bowtie • 514 views
ADD COMMENTlink modified 8.3 years ago by Kelly Vincent340 • written 8.3 years ago by Kevin150
gravatar for Kelly Vincent
8.3 years ago by
Kelly Vincent340
Kelly Vincent340 wrote:
Kevin, Some of the tools in Galaxy are wrappers of external tools, and Bowtie is one such example. These underlying tools must be installed in addition to the standard Galaxy distribution, and then some extra configuration and data preparation is necessary, before the Galaxy tool can be used. There is a wiki page dedicated to installing the NGS tools ( which details how to set these up. Let us know if you need further information. (Note that this topic is better suited to galaxy-dev instead of galaxy- user since it's about local installations.) Regards, Kelly Galaxy Team
ADD COMMENTlink written 8.3 years ago by Kelly Vincent340
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