Question: Is there a command line example/instruction of the CloudMap workflow?
gravatar for setempler
3.2 years ago by
setempler0 wrote:


this question was asked on initially, following a recommendation I put it here, too:

Dear community,

I would like to implement a command line shell or python wrapper for the CloudMap workflow (www: galaxy implementation: Therefore I want to know which software tools are used and what are the minimum/basic arguments for this analysis. I know I can use the workflow tools from to investigate the code, but:

I would like to know if there exists a a web post which shows the summarized command line tool chain used for the CloudMap workflow.

I would appreciate if people could share links or even post an example!

Many thanks.

shell workflow cloudmap • 753 views
ADD COMMENTlink modified 3.2 years ago by Wolfgang Maier600 • written 3.2 years ago by setempler0
gravatar for Wolfgang Maier
3.2 years ago by
Wolfgang Maier600 wrote:

Hello Sven,

I don't have an answer to your question, but do you know MiModD (

It's quite similar to and compatible with CloudMap, but a lot faster. Can be used as a command line package or from Galaxy.


ADD COMMENTlink written 3.2 years ago by Wolfgang Maier600
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