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Question: Where can I find the FastQC tool on the Galaxy webpage?
1
gravatar for krishnakarthik.vemuri
3.6 years ago by
krishnakarthik.vemuri • 10
krishnakarthik.vemuri • 10 wrote:

Hi, 

I am attempting to recreate an RNA Seq differential expression analysis of a previously published experiment. I have obtained the fastq files for this through EBI SRA, but I am not able to locate the FastQC tool to start my work off. I expected to find it under 'NGS:QC and Manipulation', but for some reason, I am unable to locate it. Can somebody point out my mistake?
rnaseq fastqc galaxy • 1.6k views
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modified 3.6 years ago • written 3.6 years ago by krishnakarthik.vemuri • 10

I can see the tool now, thanks all for your help. I am not sure what went right and what went wrong, but thanks again.

ADD REPLY • link written 3.6 years ago by krishnakarthik.vemuri • 10
1

This was a bug on our side, sorry for the inconvenience.

ADD REPLY • link written 3.6 years ago by Martin Čech ♦♦ 4.9k
1
gravatar for fubar
3.6 years ago by
fubar ♦ 1.1k
Australia
fubar ♦ 1.1k wrote:

Is http://usegalaxy.org the Galaxy instance you are having trouble with? I can see it there right now...Try typing "fastqc" into the search bar at the top of the tool panel on the left of the screen where it says "search tools" ?

 
ADD COMMENT • link written 3.6 years ago by fubar ♦ 1.1k

I am not able to see it...all I get when I type 'FastQC', 'fastqc' or 'FASTQC' into the search bar is the 'Combine FASTA and QUAL' tool under NGS:QC and Manipulation. I can't understand where the problem is..

ADD REPLY • link written 3.6 years ago by krishnakarthik.vemuri • 10
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