Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Where is cummeRbund in Galaxy?
0
gravatar for skkim0217
4.4 years ago by
skkim0217 • 0
Korea, Republic Of
skkim0217 • 0 wrote:

Hi

I'm trying to visualize my data with Galaxy-installed cummeRbund, following a tutorial instruction provided by RNA-seq informatics lecture. In there, the lecturer showed cummeRbund in Galaxy, but I could not find it. This lecture was done on June 10th. I wonder where I could use cummeRbund in Galaxy.

Was there a change that cummeRbund is no longer available in Galaxy?
cummerbund tool galaxy • 2.4k views
ADD COMMENT • link •
modified 4.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.4 years ago by skkim0217 • 0
0
gravatar for Jennifer Hillman Jackson
4.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This tool is in the Tool Shed for use a local or cloud Galaxy.

The repository name is: cummerbund

http://usegalaxy.org/cloud
http://usegalaxy.org/toolshed

The workshop/demonstration was almost certainly done with a Cloudman Galaxy (cloud) instance. Installing tools is straightforward through a UI interface and you can start/scale these up as needed, then discard when done, perhaps keeping a permanent/permanent data bucket (S3) at Amazon for ongoing use. Be sure to check out the AWS Grant program to help with Amazon costs (Galaxy is always free, everywhere!).

It is likely that the other tools you were shown are also in the Tool Shed. Some will be in Cloudman by default, others you can add as needed.

Hopefully this helps! Jen, Galaxy team
ADD COMMENT • link written 4.4 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 176 users visited in the last hour