Question: reference genome not present in Galaxy
0
gravatar for margherita.c86
3.8 years ago by
France
margherita.c860 wrote:

good morning,

 

i would like to use Bowtie or BWA to map reads from Illumina sequencing to the reference genome : Enterococcus faecium AUS0004 STRAIN but it is not presence as reference genome. what can i do? is it possible to upload it?

 

thank you

 

Margherita Cacaci, Roma, Italia 

alignment • 927 views
ADD COMMENTlink modified 3.8 years ago by Bjoern Gruening5.1k • written 3.8 years ago by margherita.c860
0
gravatar for Bjoern Gruening
3.8 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

You can always use a reference genome from your history. Just upload your FASTA file into your history and specify it in BWA or Bowtie.

Cheers,

Bjoern
 

ADD COMMENTlink written 3.8 years ago by Bjoern Gruening5.1k
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