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Question: How to script upload and download of files
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gravatar for alem.million
4.0 years ago by
alem.million • 0
United Kingdom
alem.million • 0 wrote:

How to upload files for processing then download the processed data? Especially to make the upload and download part of one workflow?
galaxy • 1.2k views
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modified 4.0 years ago by Martin Čech ♦♦ 4.9k • written 4.0 years ago by alem.million • 0
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gravatar for Martin Čech
4.0 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Your best choice is to use the Galaxy's API. If you can script in Python you should definitely use BioBlend library which will hide low-level complexities of using the API for you.

Bioblend docs: http://bioblend.readthedocs.org/en/latest/
Galaxy API docs: http://galaxy-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html
ADD COMMENT • link written 4.0 years ago by Martin Čech ♦♦ 4.9k
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