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Question: Obtaining a BED file for a NON-CODING chromosome locus
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gravatar for english.server
3.1 years ago by
english.server • 0
Germany
english.server • 0 wrote:

I am new to Galaxy and do not know how to obtain a BED file for a NON-CODING chromosome locus (preferebly with no downloads/uploads required, as my internet speed is really low). I would greatly appreciate if anyone could guide me.
non_coding locus bed file • 760 views
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modified 3.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.1 years ago by english.server • 0
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gravatar for Jennifer Hillman Jackson
3.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Do you know the specific genomic location? A BED file could simply be created (type the contents into the Upload tool, top of tool panel). This is the format: Learn/Datatypes#Bed

BED files are generally small (compared to other datatypes) and even if you created one, uploading should not be a problem. If know of a data source that you wish to load data from, there might be a "Get Data" tool to extract the data without going through a download/upload cycle (directly loads into Galaxy). And if file is available with a public URL, it can be loaded that way with the Upload tool also without any dependencies on your local network at all. Loading_data

Please explain more about what you want to do if you need more help. Jen, Galaxy team
ADD COMMENT • link modified 3.1 years ago • written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

Thank you indeed very much.

ADD REPLY • link written 3.1 years ago by english.server • 0
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