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Question: Adding RSeQC tools to web-based Galaxy
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gravatar for mmata2
4.1 years ago by
mmata2 • 0
United States
mmata2 • 0 wrote:

Hi,

I'm trying to upload several RSeQC tools to the web-based Galaxy but the information I have found so far does not help. Anyone has tried this before?

Thanks

 
rna-seq galaxy • 862 views
ADD COMMENT • link •
modified 4.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.1 years ago by mmata2 • 0
1

Do you mean that you are trying to install this repository from the ToolShed?
https://toolshed.g2.bx.psu.edu/view/nilesh/rseqc

If not please explain in more detail what are you trying to do.

ADD REPLY • link written 4.1 years ago by Martin Čech ♦♦ 4.9k
0
gravatar for Jennifer Hillman Jackson
4.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi, 

As Martin mentioned, tools from the Tool Shed cannot be loaded into the public Main Galaxy instance at http://usegalaxy.org. And from what I know, other public Galaxy instances have the same policy. Administrative permissions are necessary, but beyond the technical criteria, the reason is so that tool content is managed by the instance owner. 

That said, I opened a Trello ticket last summer for the team to consider including this tool on Main. A decision has not been made yet. You can review the request here (and vote on it): https://trello.com/c/goBlVjVW

Instructions for Trello (if needed): http://wiki.galaxyproject.org/Support#Galaxy_Issue_Board

To use this tool right now, try a local or cloud Galaxy. More help is here:
http://wiki.galaxyproject.org/BigPicture/Choices

Best, Jen, Galaxy team
ADD COMMENT • link written 4.1 years ago by Jennifer Hillman Jackson ♦ 25k
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