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Question: STR-FM Fetch bases flanking tool not working (web based galaxy)
0
gravatar for nigonzalezc
21 months ago by
nigonzalezc • 0
nigonzalezc • 0 wrote:

Hi all,

I've been getting this error message for a while upon trying to use the "fetch bases flanking tool" of STR-FM in web based galaxy (tool used to work fine before):

Traceback (most recent call last): File "/galaxy/main/shed_tools/toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/48b5f719e36a/str_fm/pair_fetch_DNA_ff.py", line 14, in <module> from galaxy import eggs ImportError: No module named galaxy

Does anyone know what might be causing it and if there is anything I can do to fix it?

Thank you in advance for any help you can provide,

Nicolás
software error galaxy • 538 views
ADD COMMENT • link •
modified 19 months ago by Martin Čech ♦♦ 4.9k • written 21 months ago by nigonzalezc • 0
0
gravatar for arkarachai.af
19 months ago by
arkarachai.af • 20
United States
arkarachai.af • 20 wrote:

Hi Nicolas,

The recent Galaxy main update makes the python galaxy module unavailable. I made the new version of the code and gave to the galaxy team a few weeks ago. Hopefully, they will replace the code soon. If not, you may take the source code from my GitHub (see in publication in citation of the tool ) and run galaxy locally with the new version of source code.

Best, Chai
ADD COMMENT • link written 19 months ago by arkarachai.af • 20
1

Please update your repository in the Tool Shed and everybody can update their Galaxies as necessary.

ADD REPLY • link written 19 months ago by Martin Čech ♦♦ 4.9k
0
gravatar for Martin Čech
19 months ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

This should be fixed on Main and any other Galaxy once they update Galaxy with https://github.com/galaxyproject/galaxy/pull/3973 or update the tools to latest versions (once updated in the main tool shed)
ADD COMMENT • link written 19 months ago by Martin Čech ♦♦ 4.9k
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