Question: Any miRNAseq tools in GALAXY?
1
gravatar for Larry Reiter
4.1 years ago by
Larry Reiter100
Larry Reiter100 wrote:

Any plans to integrate tools for miRNAseq analysis?  I am thinking of using miRDeep and miRtools.

 

Thanks in advance.

 

LTR

ADD COMMENTlink modified 3.8 years ago by Bjoern Gruening5.1k • written 4.1 years ago by Larry Reiter100
1
gravatar for Bjoern Gruening
4.0 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

I'm not aware of any wrapper, but it's on our ToDo list. We got a small grant to make RNA tools more accessible, this includes Galaxy wrappers.

Ciao,

Bjoern

ADD COMMENTlink written 4.0 years ago by Bjoern Gruening5.1k
1
gravatar for Bjoern Gruening
3.8 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Latest version of mirDeep2 is now included in the Galaxy Test Tool Shed: https://testtoolshed.g2.bx.psu.edu/view/rnateam/suite_mirdeep_2_0

ADD COMMENTlink written 3.8 years ago by Bjoern Gruening5.1k
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