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Question: Illumina Methylation Tool In Toolshed
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gravatar for Sachit Adhikari
5.3 years ago by
Sachit Adhikari • 320
Sachit Adhikari • 320 wrote:
Hi, This is my third post regarding this matter but however I didn't get any reply. I am trying to find a tool for r Illumina Methylation. Is there any available on the tool shed or test tool shed? Thanks, Sachit
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modified 5.3 years ago by Björn Grüning • 350 • written 5.3 years ago by Sachit Adhikari • 320
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gravatar for Björn Grüning
5.3 years ago by
Björn Grüning • 350
Björn Grüning • 350 wrote:
Hi Sachit, not in the toolshed but you can find a start here: https://github.com/bgruening/galaxytools/tree/master/illumina_methylat ion_analyser its for the 450k chips, I have also some tools for WGMA if you are interested. Cheers, Bjoern
ADD COMMENT • link written 5.3 years ago by Björn Grüning • 350
Hi Bjoern, Thank you for your reply. To be precise I am looking for a wrapper of * lumi. *http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html Do we have that in main tool shed or test tool shed or in github? Thanks, Sachit On Mon, Jul 29, 2013 at 2:53 PM, Bjoern Gruening <
ADD REPLY • link written 5.3 years ago by Sachit Adhikari • 320
Not that I know of, mine is wrapping IMA. cheers, Bjoern *http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html https://github.com/bgruening/galaxytools/tree/master/illumina_methylat ion_analyser
ADD REPLY • link written 5.3 years ago by Björn Grüning • 350
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