Similar posts • Search »

• Help with LEfSe
  I'm using the LEfSe algorithm, however I have some difficulties. How come I succeeded line C (pl...
• Qiime file not found error
  Hi, I integrated Qiime into Galaxy using the qiime-galaxy integration ( https://github.com/qiime...
• LEfSe output different from before, using same input file and parameters
  Can someone please weigh in? Perhaps there has been a change in the LEfSe software? We used our d...
• Another step to make Trinity output usable with Blast
  I have an output from Trinity that looks like an assembled genome. When I use Blast to check for ...
• QIIME availability on Galaxy Main?
  Will QIIME be available on the Galaxy main? I see there is a recent Qiime suite on the main tools...
• LefSe problems with data format tool
  Hi. I am trying to use Lefse format data tool and I keep getting an error message, even with data...
• Problems with LEfSe tool
  Hello, I have problems with LEfSe tool since a long time. First of all, the server takes a lot ...
• TopHat RNA-Seq FASTQ file not seen
  Hey, I'm trying to use Galaxy to process my RNA-seq data. I have uploaded the fastq file to gal...
• Can't uncheck 'Strand Column' box in attributes of interval file and save
  Hello, I have an interval file uploaded to one of my galaxy histories. This file does not contain...
• User Dropdown Menu As Galaxy Input File
  Good afternoon, I have a query that I hope you can help me with. I am using RGalaxy, and have su...
• Error "Out Of Memory" When Trying To Retrieve Output
  Hello, I wanted to download the accepted junction .bam file from tophat output of my local instan...
• QIIME: chimera removal after OTU picking using uclust
  I am using qiime for 16srRNA analysis. I used pick_open_reference_otus.py  with green genes as re...
• Galaxy Help!!
  I am trying to use LEfSe but keep getting the same error. My data loads fine, but then I cannot g...
• Add constaxonomy file from Mothur to Lefse
  I try to use my Mothur data in Galaxy to run Lefse. I manage to add my shared.file and design fil...
• Trouble Installing Galaxy On Cluster
  So here is what I've installed so far. (/usr/local/galaxy) is a directory that all nodes in the ...