Question: LefSe problems with data format tool
gravatar for silviap
17 months ago by
silviap10 wrote:

Hi. I am trying to use Lefse format data tool and I keep getting an error message, even with data files that worked before. Is anyone having problems also????? Thanks

error software error lefse • 779 views
ADD COMMENTlink modified 16 months ago by Jennifer Hillman Jackson25k • written 17 months ago by silviap10

Yes, I have been having the same problems for weeks. Did you get to solve it?

ADD REPLYlink written 8 months ago by anabgs10
gravatar for Jennifer Hillman Jackson
16 months ago by
United States
Jennifer Hillman Jackson25k wrote:


There were some problems with the Main Galaxy server at last week then again over the weekend. These are now resolved. Details:

Please rerun your job and if you have problems, double check the inputs as described in the "Troubleshooting" section of the linked post above. This includes moving to the latest tool version (if not already in use, LefSe was recently updated at Galaxy Main and prior versions may be problematic).

If you cannot determine the problem using the latest tool version, a bug report can be sent in and we can help. If there is a history that has the successful prior runs in it, that can be included in the bug report comments as a shared history link for comparison. Should there be some problem with the tool, characterizing and fixing it is important to us. Please make sure that any histories send in for review have the input and output dataset(s) left undeleted.

Thanks for reporting the issue, Jen, Galaxy team

ADD COMMENTlink written 16 months ago by Jennifer Hillman Jackson25k
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