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Question: Start Galaxy Error
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gravatar for fantasticpjyao
4.4 years ago by
fantasticpjyao • 0
Taiwan
fantasticpjyao • 0 wrote:

Dear all,

I got a problem when starting galaxy by using 'sh run.sh'

exception as below shown:

-----------------------------------------------------------------------------

  File "/home/pjyao/galaxy-dist/eggs/boto-2.27.0-py2.7.egg/boto/regioninfo.py", line 40, in load_endpoint_j          son
IOError: [Errno 20] Not a directory: '/home/pjyao/galaxy-dist/eggs/boto-2.27.0-py2.7.egg/boto/endpoints.json'
galaxy.jobs.handler INFO 2014-07-02 16:00:24,200 sending stop signal to worker thread
galaxy.jobs.handler INFO 2014-07-02 16:00:24,200 job handler queue stopped
galaxy.jobs.runners INFO 2014-07-02 16:00:24,200 LWRRunner: Sending stop signal to monitor thread
galaxy.jobs.runners INFO 2014-07-02 16:00:24,200 LWRRunner: Sending stop signal to 3 worker threads
galaxy.jobs.runners INFO 2014-07-02 16:00:24,200 LocalRunner: Sending stop signal to 5 worker threads
galaxy.jobs.handler INFO 2014-07-02 16:00:24,201 sending stop signal to worker thread
galaxy.jobs.handler INFO 2014-07-02 16:00:24,201 job handler stop queue stopped

----------------------------------------------------------------------------

Is there anyone got this exception as well?

:(

PJ
galaxy • 1.1k views
ADD COMMENT • link •
written 4.4 years ago by fantasticpjyao • 0
0
gravatar for Bjoern Gruening
4.4 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Can you try to remove the boto.egg and fetch it again with the ./scripts/fetch_eggs.py script?
ADD COMMENT • link written 4.4 years ago by Bjoern Gruening ♦ 5.1k

Actually I cannot use "./script/fetch_eggs.py", it always show 

-------------------------------------------------------------------

Warning: boto (a dependent egg of bioblend) cannot be fetched
boto 2.27.0 couldn't be downloaded automatically.  You can try
building it by hand with:
  python scripts/scramble.py -e boto

-------------------------------------------------------------------

then I used  "python scripts/scramble.py -e boto", it still got a error with "IOError: [Errno url error] invalid proxy for http" message

Therefore I used this script "python ./scripts/make_egg_packager.py" to get a python file , excuted it on windows to get all the eggs, then replaced old eggs.

The problem is still there!!

By the way, I run Galaxy Server on Linux (Red Hat) 

 

ADD REPLY • link written 4.4 years ago by fantasticpjyao • 0
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