Question: CummeRbund and Galaxy read_group_tracking files
gravatar for bixdw
3.6 years ago by
United Kingdom
bixdw0 wrote:

Dear All,

I really hope it is a trivial question that can be easily resolved. I would like ot look at the individual replicates in cummeRbund. I ran the cuffdiff on the Galaxy main server and got 15 files. of these I know how to rename them per the manual but there are 4 which contain the replicate information that I do not know what to do with. What is the naming convention for these files? If I don't do this i have no replicate information and I really don't kow how to build these files into the database.

Thank you for all the help





cummerbund rna-seq • 886 views
ADD COMMENTlink modified 3.6 years ago by Jennifer Hillman Jackson25k • written 3.6 years ago by bixdw0
gravatar for Jennifer Hillman Jackson
3.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


The "gene/transcript" information can be traced back in the Cufflinks output to determine the source. Do this for one, create a workflow, then use for the rest. "Filter" or "Select" along with "Join" can be useful tools for these operations.

Thanks, Jen, Galaxy team


ADD COMMENTlink written 3.6 years ago by Jennifer Hillman Jackson25k
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