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Question: Directory Tree for Galaxy output?
1
gravatar for hroe.lee
4.5 years ago by
hroe.lee • 20
United States
hroe.lee • 20 wrote:

Is there a way that we can provide multiple output files in a directory listing when we have many files as a Galaxy result? I used to have a compressed file that contains all the output files or to follow the instruction about handling multiple output files from: https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files.

With the directory listing on the web, we can directly get access to the output files and navigate what output that we have, I guess. If there are other options about managing multiple output files, I really want to hear about that.

What do you recommend?
multiple output directory multiple files galaxy • 1.3k views
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modified 4.5 years ago by Peter Cock • 1.4k • written 4.5 years ago by hroe.lee • 20
0
gravatar for Peter Cock
4.5 years ago by
Peter Cock • 1.4k
European Union
Peter Cock • 1.4k wrote:

This sounds like a development question from a tool author perspective, rather than as a Galaxy user?

Have you looked at Dataset Collections? - see https://wiki.galaxyproject.org/DevNewsBriefs/2014_06_02
ADD COMMENT • link written 4.5 years ago by Peter Cock • 1.4k
1

Hopefully collections will be able to solve this problem within the next few releases but currently tools cannot create collections. There is an open Trello card for that feature here https://trello.com/c/KXjp6lIn.

In the meantime - I think the two options (both with admittedly serious limitations) are runtime collected datasets and composite datatypes are outlined on the wiki page linked to in the question.

ADD REPLY • link written 4.5 years ago by jmchilton ♦ 1.1k
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