Question: Directory Tree for Galaxy output?
1
gravatar for hroe.lee
4.2 years ago by
hroe.lee20
United States
hroe.lee20 wrote:

Is there a way that we can provide multiple output files in a directory listing when we have many files as a Galaxy result? I used to have a compressed file that contains all the output files or to follow the instruction about handling multiple output files from: https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files.

With the directory listing on the web, we can directly get access to the output files and navigate what output that we have, I guess. If there are other options about managing multiple output files, I really want to hear about that.

What do you recommend?

ADD COMMENTlink modified 4.2 years ago by Peter Cock1.4k • written 4.2 years ago by hroe.lee20
0
gravatar for Peter Cock
4.2 years ago by
Peter Cock1.4k
European Union
Peter Cock1.4k wrote:

This sounds like a development question from a tool author perspective, rather than as a Galaxy user?

Have you looked at Dataset Collections? - see https://wiki.galaxyproject.org/DevNewsBriefs/2014_06_02

ADD COMMENTlink written 4.2 years ago by Peter Cock1.4k
1

Hopefully collections will be able to solve this problem within the next few releases but currently tools cannot create collections. There is an open Trello card for that feature here https://trello.com/c/KXjp6lIn.

In the meantime - I think the two options (both with admittedly serious limitations) are runtime collected datasets and composite datatypes are outlined on the wiki page linked to in the question.

ADD REPLYlink written 4.2 years ago by jmchilton1.1k
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