I am testing a tool integration on my basic Galaxy instance. When I test the tool outside of Galaxy with relatively small set of data as inputs, it takes about 30min to complete. Now, after what I hope is a correct integrated into Galaxy (no errors), the job is running for several hours without completing (yellow-state in History). I have used the same set of data.
Is this an indication for some integration problem ? What could be wrong ?
Any ideas would be appreciated.