Similar posts • Search »

• Trackster will not display Data
  Hello,  I have uploaded six samples tophat accepted hits (.bam files) and a refGenome into the T...
• Trackster Not Showing Visulization
  Hello, I am trying to use trackster to compare samples against a reference genome. I have upload...
• Problem In Saving Visualizations In Trackster
  Hello, I am registered as jigassa@yahoo.com in Galaxy main. recently I am trying to save visualiz...
• Problem in visualizing tracks in trackster
  I cannot visualize new tracks on trackster. I can see that the tracks get added on for visualizat...
• Trackster Error On Dbkeys
  Hi all, I am setting up galaxy on a server running CentOS 6.5. I found that Trackster applicatio...
• visualizing a VCF dataset
  Hiiii, i have made a vcf file and has filtered SNPs from there. Now, the problem is i am trying t...
• Problem With Cuffdiff
  Hy guys, I am performing some RNA sequencing. I am using a gtf file as a reference annotation for...
• cufflinks running problem
  Hello, I´m having problems in running Cufflinks. Yesterday morning I used the Tophat accepted hi...
• RNA seq peaks
  how to visualize RNA seq peaks (what format) between different conditions in UCSC genome browser....
• Genome Browser Histogram Visualization Of Accepted Hits
  Hello, I am attempting to run accepted hit data from Tophat output into the UCSC Genome Web Brow...
• Having problems using visualization-trackster
  Hello, I am attempting to align my Illumina MiSeq paired end (2x250) reads to 2 different refere...
• Problem with collectrnaseqmetrics (Galaxy)
  I am attempting to run CollectRnaSeqMetrics on a tophat run (with my gff3 annotations and fasta g...
• Why is TopHat not working?
  I have been trying to analyze data for 48 hours now, and TopHat won't execute. It just stays with...
• Problems with Trackster visualization?
  Is there a problem with Trackster? The resolution of the visual image after loading the peaks is ...
• Problems Adding A Custom Build
  Hi, I am having problems that I think are related: *1. * I have not been able to visualize (in ...
• Chrdecoy Error In Trackster
  Hello, I’ve been using Galaxy for RNA-seq analysis. Many thanks for this great resource! I hav...
• Trackster not showing alignments
  I'm trying to visualize a BAM file made with tophat2 using trackster. When I click on the Visuali...
• Track visualization tool
  Hello, I haven't been able to visualize my ChIP-Seq peaks using track visualization tools. Previo...
• Link To Display Bed Files In Ucsc Genome Browser
  Dear all, For BED files, there used to be an option in the preview window to visualize them in t...
• visualize tophat output on custom (zerbafish) genome, output not in list
  I am a beginner so this may be a basic question....I have taken 2 rnaseq datasets from the geo da...
• Trackster Error Chrom/?.Len , No Such File Or Directory
  I have my own genome fasta file containing 1 chromosome with a modified header so that it looks l...
• Normalization An Dplotting Of Rpkm/Fpkm After Cufflink
  Hi,   I want to include the following discussion in my message regarding use Bam files of To...