Question: Chrdecoy Error In Trackster
0
doanea@mskcc.org • 10 wrote:
Hello,
Ive been using Galaxy for RNA-seq analysis. Many thanks for this
great resource!
I have run into a problem that I hope someone might be able to help me
with. When loading my .BAM files and/or .gtf files into trackster, I
get an error stating: "Input error: Chromosome chrDecoy found in your
input file but not in your genome file.
My Illumina fastq files were QCed and aligned using tophat to hg19,
and I used cufflinks with hg19 as annotation guide. All my files have
hg19 as the dbkey.
My guess is that the hg19 I used as a reference differs form the built
in model, but I am not sure how I might fix this. Fwiw, I am able to
load all my data into IGV, using hg19 as the genome, and visualize
everything.
Any suggestions would be really appreciated!
Thanks!
Ashley
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modified 4.9 years ago
by
Jennifer Hillman Jackson ♦ 25k
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4.9 years ago by
doanea@mskcc.org • 10
