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• Trackster will not display Data
  Hello,  I have uploaded six samples tophat accepted hits (.bam files) and a refGenome into the T...
• Having problems using visualization-trackster
  Hello, I am attempting to align my Illumina MiSeq paired end (2x250) reads to 2 different refere...
• Trackster Error: Needlargemem: Trying To Allocate 0 Bytes (Limit: 100000000000)
  I'm having problems getting Trackster working on my own Galaxy instance, so I thought I would che...
• Question About The Gatk Tools
  Hi, I just uploaded the BAM file for an exome sequencing sample and was trying to use the GATK t...
• Inbuilt reference genome
  Hi, I ran a top hat analysis on samples, but after the cuffdiff step, I do not have any genes an...
• No reference genomes on galaxy hisat2
  I am trying to do rnaseq analysis but galaxy doesn't seem to have any reference genomes on hisat2...
• Trackster not showing alignments
  I'm trying to visualize a BAM file made with tophat2 using trackster. When I click on the Visuali...
• Trackster Error
  Hello, I am trying to look at an output from Tophat using Trackster, but I keep getting the foll...
• RNA-Seq analysis for 2 genes
  Hi, I did RNA-seq for 20 samples and I am interested in the differential expression of normal tra...
• Problems with Trackster visualization?
  Is there a problem with Trackster? The resolution of the visual image after loading the peaks is ...
• Deseq2 usage Galaxy
  Hello, I am trying to do some differential expression count on RNA Seq data using Galaxy. I did a...
• Data From History Now Showing Up In Fastq Drop Down
  Hi All, We have a galaxy local install. Thanks to Carlos's suggestion, I was able to get the ref...
• Cufflink Workflow
  Hi, I want to compare gene deferentially expressed in two conditions (1 and 2). I don't have a GT...
• Using BWA with Illumina data and metagenomic "reference genome"
  Hi, I'd like to try using BWA to align Illumina reads to some contigs a collaborator made from my...
• Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
  I am planning to use exogenous chromatin as a spike in control with my actual sample from mouse t...
• Trackster Error Chrom/?.Len , No Such File Or Directory
  I have my own genome fasta file containing 1 chromosome with a modified header so that it looks l...
• can't access data managers
  Hi, I'm trying to use Data Managers to add my own built-in reference genomes for Hisat on a loca...
• How To Find Out Snps And Point Mutations In Rna-Seq Data Using Galaxy?
  HI, I am new to the RNA-seq, and the only available sources for me to do analysis is the Galaxy s...
• HISAT2 - no reference genome available
  HISAT2 does not have any options for a built-in reference genome. I need mm10. Source for the r...
• RNAseq: RNA STAR ---Mapping to a viral genome
  Hi, I am analyzing an infection time course in a human cell line transduced with Vaccinia virus. ...