Question: (No Subject)
gravatar for Maria Hoffman
5.2 years ago by
Maria Hoffman30 wrote:
Hello, I am fairly new to galaxy and I am trying to use bowtie2 to map my reads against a custom genome (specifically a ribosomal RNA fasta file). I have formatted the file as suggested in the Galaxywiki ect and I am still getting the following message: Job output not returned by PBS: the output datasets were deleted while the job was running, the job was manually dequeued or there was a cluster error. Any help would me much appreciated! Maria
alignment bowtie • 934 views
ADD COMMENTlink modified 5.2 years ago by Jennifer Hillman Jackson25k • written 5.2 years ago by Maria Hoffman30
gravatar for Jennifer Hillman Jackson
5.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Maria, This message indicates that an error occurred on the cluster node processing the job. Normally these are not linked to inputs or tools and the general solution is to re-run the job. Please give this a try today - it is possible the error was linked to recent transient server issues. If you continue to have problems after the re-run today, please submit a bug report from the error dataset, leaving inputs and outputs undeleted: Best, Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 5.2 years ago by Jennifer Hillman Jackson25k
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