Question: Stdout And Stderr Files
6.5 years ago by
Poornima Pochana • 20
Poornima Pochana • 20 wrote:
Hi, I have a personal galaxy instance with the runner as SGE. I am able to successfully submit jobs, and the output folder is created at $file_path. But I see that the SGE job log files ie., stdout and stderr - <job-name>.o and <job-name>.e are being removed in the cleanup function in sge.py. Is this right? Is galaxy capturing the jobs stdout and stderr some where else? Also when I click on the link Tool Standard Output from galaxy web interface, it returns empty. Is there a setting that I should have to view jobs stdout, stderr from the web interface? Thanks, Poornima.
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