Question: How To Add Settings Of Tmpdir=/Scratch For Sge/Drmaa In Universe_Wsgi.Ini
0
tin h • 10 wrote:
Hello galaxy gurus,
I am trying to configure a local galaxy server to submit to SGE using
DRMAA,
it works, but I would like to specify the equivalent of "-v
TMPDIR=/scratch" for qsub.
I tried updating universe_wsgi.ini with something like:
default_cluster_job_runner = drmaa://-q default.q -V -v
TMPDIR=/scratch/
but that doesn't work because "/" is a delimiter, and I have not been
able
to find way to escape it. Is there any tricks for this?
Much thanks in advance for your help in this matter.
-Tin