Question: galaxy 18.01 sge drmaa
gravatar for janecao999
6 months ago by
janecao9990 wrote:

The galaxy release 18.01 didn't work with our sge cluster. We tried to trace where the bug can be and noticed that galaxy process stopped when reached "setattr(template, key, kwds[key])" command under .venv/lib/python2.7/site-packages/pulsar/managers/util/drmaa. We used ""template.key = kwds[key]" to replace "setattr(template, key, kwds[key])" command, then galaxy continued to DrmaaSession.session.deleteJobTemplate(template) step and stopped with error message ""drmaa.Session.runJob() failed, will retry: code 17: job template must have "drmaa_remote_command" attribute set". Does anybody know where drmaa_remote_command attribute is defined in galaxy or can it be compatible issue with the sge library? We used UGE8.0.1vm.

galaxy • 156 views
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