Question: having problem with GATK
0
rutuja.8788 • 0 wrote:
I am Bhagyashri and i have problem using GATK tool in GALAXY. I am getting this error mentioned bellow. I have tried every possible way known to me but i am not able to solve it.
"Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/scratch [Fri Jun 12 01:54:32 CDT 2015] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/galaxy-repl/main/scratch/tmp-gatk-0_0gVM/gatk_input.fasta OUTPUT=/galaxy-repl/main/scratch/tmp-gatk-0"