Question: After 'Trim Sequences', 'Map W/Bowtie' Job Has Been Waiting For Days To Run
gravatar for Theresa Stueve
5.3 years ago by
Theresa Stueve20 wrote:
Greetings, I am using Galaxy Main; On 8/1/2013, and after 'trimming sequences' on my 'FASTQ groomed' data, I attempted to align my (single-end) 'trimmed sequences' output data to 'hg19 Canonical male' with 'Map with Bowtie for Illumina' It is now 8/3/2013, and the 'Map with Bowtie for Illumina' job has been 'waiting to run' >+48hrs. I have 're-newed' the history several times, but have not deleted or re-run the original job for fear of losing my place in the queue. To check if 'canonical male' was the problem, I queued a second alignment to be 'mapped w/bowtie for Illumina' against hg19 (no sex); this job has also not run after being queued mor than 24 hours ago. Can you tell me if the delay is because I've done something incorrectly or if there's some action I can take to speed things? your help is deeply and sincerely appreciated -- (Theresa) Ryan Stueve Department of Preventive Medicine Ite Laird-Offringa Lab NTT 6420
alignment bowtie • 975 views
ADD COMMENTlink modified 5.3 years ago by Jennifer Hillman Jackson25k • written 5.3 years ago by Theresa Stueve20
gravatar for Jennifer Hillman Jackson
5.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, This is the same issue - the public Main Galaxy has been very slow recently, but is catching up. Again, very sorry for the confusion, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.3 years ago by Jennifer Hillman Jackson25k
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