Question: Sicer Dose Not Support Chicken Genome
gravatar for Chen, Jingchen
5.8 years ago by
Chen, Jingchen10 wrote:
Hi all I just found that I could not use sicer to call peaks from chicken data. It says 'sicer dose not support the genome'. Could anyone fix this? Best Jingchen
ADD COMMENTlink modified 5.8 years ago by Jennifer Hillman Jackson25k • written 5.8 years ago by Chen, Jingchen10
gravatar for Jennifer Hillman Jackson
5.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Jingchen, This is correct, the Sicer tool has the supported genomes hardcoded in by the tool authors. These are (not all are the same as Galaxy "database" names): 'mm8', 'mm9', 'hg18', 'hg19', 'dm2', 'dm3', 'sacCer1', 'pombe', 'rn4', 'tair8' To ask about adding more genomes, you could try contacting the tool authors here through their google group: I asked and our team was unaware of any updates, but if there was one, the tool authors could submit to the Took Shed and and/or create a development ticket as appropriate. Hopefully this helps to clarify and point you in the right direction, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.8 years ago by Jennifer Hillman Jackson25k
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