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Question: Sicer Dose Not Support Chicken Genome
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gravatar for Chen, Jingchen
5.8 years ago by
Chen, Jingchen • 10
Chen, Jingchen • 10 wrote:
Hi all I just found that I could not use sicer to call peaks from chicken data. It says 'sicer dose not support the genome'. Could anyone fix this? Best Jingchen
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modified 5.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.8 years ago by Chen, Jingchen • 10
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gravatar for Jennifer Hillman Jackson
5.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Jingchen, This is correct, the Sicer tool has the supported genomes hardcoded in by the tool authors. These are (not all are the same as Galaxy "database" names): 'mm8', 'mm9', 'hg18', 'hg19', 'dm2', 'dm3', 'sacCer1', 'pombe', 'rn4', 'tair8' To ask about adding more genomes, you could try contacting the tool authors here through their google group: http://home.gwu.edu/~wpeng/Software.htm I asked and our team was unaware of any updates, but if there was one, the tool authors could submit to the Took Shed and and/or create a development ticket as appropriate. Hopefully this helps to clarify and point you in the right direction, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENT • link written 5.8 years ago by Jennifer Hillman Jackson ♦ 25k
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