Question: Sicer and mm10/ galaxy lift-over
gravatar for cmcqueen
2.8 years ago by
cmcqueen0 wrote:

Hi All,

Is there any chance the SICER will or can be updated to support mm10?  Also, it doesn't appear that I can lift-over mm10 to mm9.  Is this just a user error?  Thank you.

software update • 901 views
ADD COMMENTlink modified 22 months ago by rfabmc10 • written 2.8 years ago by cmcqueen0
gravatar for Jennifer Hillman Jackson
2.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:


If you are working at

  • Sicer will work with any genome, including mm10
  • Liftover has mm10->mm9 loaded. Perhaps double check the BED input has the database (mm10) assigned?

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.8 years ago by Jennifer Hillman Jackson25k
gravatar for rfabmc
22 months ago by
rfabmc10 wrote:

Dear Jen,

I'm experiencing the same problem regarding lifting over from mm10 to mm9. Database is properly assigned, could you provide further information in how this problem could be solved, please?


ADD COMMENTlink written 22 months ago by rfabmc10
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