Question: Extract Genomic Dna Problem
0
Steve Taylor • 240 wrote:
Hi,
I was trying to extract FASTA sequences using the following tab
separated data for Chicken on the Galaxy Main server:
chr5 47258168 47259240
chr18 1938527 1939965
chr2 101973625 101974007
chr4 75653898 75674045
chr19 4258837 4263299
chr4 39330049 39372715
chr4 9606881 9610083
chr15 7264937 7265599
chr21 6659189 6667015
chr2 351239 352821
I got the following galaxy output:
====================================
7: Extract Genomic DNA on data 6
empty
format: fasta, database: galGal3
Info: 10 warnings, 1st is: Unable to fetch the sequence from
'47258168' to '1072' for build 'galGal3'.
Skipped 10 invalid lines, 1st is #1, "chr5 47258168 47259240"
Any ideas what I am doing wrong?
Thanks,
Steve