Question: Galaxy December 20, 2012 Distribution & News Brief
gravatar for Jennifer Hillman Jackson
5.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:
*Galaxy Dec 20, 2012 Distribution & News Brief <http:"" news="" 2012_12_20_distributionnewsbrief="">* *Complete News Brief <http:"" devnewsbriefs="" 2012_12_20="">* *Highlights:* * *Required Metadata Reset* for instances running *Tool Shed <http:"" tool%20shed="">* repositories. Be sure to *learn how <http:"" resettingmetadataforinstalledreposi="" tories="">*. * *Simplified tool config*: all tools (including tool shed repos) can now have handlers and runners assigned based on their "short id". * *New* GFF <http:"" learn="" datatypes#gff="">/GFF3 <http:"" learn="" datatypes#gff3=""> annotation support for *Cuffcompare/merge/diff <http:"" manual.html="">*. * *More Updated* tools: *TopHat2 <http:"" manual.html="">*, *Bowtie2 <http:"" bowtie2="" manual.shtml="">*. * *Multiple pull-requests* contributed by community (thanks!): *#83 <https:"" galaxy="" galaxy-central="" pull-="" request="" 83="" allow-a-datatypes-merge-method-to="">*, *#85 <https:"" galaxy="" galaxy-central="" pull-request="" 85="" another-round-of-bug-fixes-and="">*, *#90 <https:"" galaxy="" galaxy-central="" pull-request="" 90="" patch-to-make-extended_metadata-loader="">*, *#91* <https:"" galaxy="" galaxy-central="" pull-request="" 91="" fixing-missing-jobwrapper-import="">. * *Issue tracking help* is now covered in detailed in our new wiki: *Using the Galaxy Issue Board <http:"" issues="">* * *GCC2013 Training Day Topic Nominations <http:"" events="" gcc2013="" trainingday=""> are now open* through /*January 11th*/ <http:"" events="" gcc2013="" keydates=""> * *Plus* more *Tool Shed <http:"" tool%20shed="">* updates, *Bug Fixes*, and improvements to *Trackster, UI, Libraries, and Histories*. * <http:"">* * <http:"" galaxy="" galaxy-dist="">* * <http:""> * new: $ hg clone galaxy-dist upgrade: $ hg pull -u -r 36ad8aa7b922 *Best wishes for a safe and happy holiday*, /*The Galaxy Team <http:"" galaxy%20team="">*/ -- Jennifer Jackson
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