Question: December 3, 2012 Distribution & News Brief
0
gravatar for Jennifer Hillman Jackson
6.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
December 3, 2012 Distribution & News Brief <http: wiki.galaxyproject.org="" news="" 2012_12_03_distributionnewsbrief=""> * Complete News Brief <http: wiki.galaxyproject.org="" devnewsbriefs="" 2012_12_03="">* * Highlights:* * *NGS: Mapping* tools *Bowtie <http: bowtie-bio.sourceforge.net="" index.shtml="">* and *Lastz <http: www.bx.psu.edu="" %7ersharris="" lastz=""/>* have moved from the *Galaxy distribution <https: bitbucket.org="" galaxy="" galaxy-dist="">* to the *Galaxy Main Tool Shed <http: toolshed.g2.bx.psu.edu=""/>*. * Improvements in the display of *Tool Shed <http: wiki.galaxyproject.org="" tool%20shed="">* repository dependencies and contents. * More *Tool Shed <http: toolshed.g2.bx.psu.edu=""/>* updates including details of the Functional test framework <http: wiki.galaxyproject.org="" hostingalocaltoolshed#functional_te="" st_framework_for_the_tool_shed="">, a new hgweb.config file and HgWebConfigManager tool, plus other management features. * Updated *UI* display and functionality for datasets and histories: new *paused* state and "resume/paused" toggle, new *History menu options*, and improved *Scatterplot* visualizations. * The *SGE* job runner has now been fully deprecated and replaced with *DRMAA*. * Several enhancements to aid with *reproducibility*: "Re-run" and "Extract workflow" validates datasets and tools, respectively, and a new data tables registry within the Administration menu, along with associated tools, corrects or warns about tool migration issues. * Highlights from the new Galaxy *CloudMan <http: usegalaxy.org="" cloud="">* release and /*December 2012 Galaxy Update <http: wiki.galaxyproject.org="" galaxyupdates="" 2012_12="">*/. * http://getgalaxy.org* *http://bitbucket.org/galaxy/galaxy-dist* *http://galaxy-dist.readthedocs.org* new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: $ hg pull -u -r f364d992270c * Thanks for using Galaxy!* The Galaxy Team <http: wiki.galaxyproject.org="" galaxy%20team=""> -- Jennifer Jackson http://galaxyproject.org
alignment bowtie • 786 views
ADD COMMENTlink written 6.0 years ago by Jennifer Hillman Jackson25k
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