Question: December 3, 2012 Distribution & News Brief
gravatar for Jennifer Hillman Jackson
6.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
December 3, 2012 Distribution & News Brief <http:"" news="" 2012_12_03_distributionnewsbrief=""> * Complete News Brief <http:"" devnewsbriefs="" 2012_12_03="">* * Highlights:* * *NGS: Mapping* tools *Bowtie <http:"" index.shtml="">* and *Lastz <http:"" %7ersharris="" lastz=""/>* have moved from the *Galaxy distribution <https:"" galaxy="" galaxy-dist="">* to the *Galaxy Main Tool Shed <http:""/>*. * Improvements in the display of *Tool Shed <http:"" tool%20shed="">* repository dependencies and contents. * More *Tool Shed <http:""/>* updates including details of the Functional test framework <http:"" hostingalocaltoolshed#functional_te="" st_framework_for_the_tool_shed="">, a new hgweb.config file and HgWebConfigManager tool, plus other management features. * Updated *UI* display and functionality for datasets and histories: new *paused* state and "resume/paused" toggle, new *History menu options*, and improved *Scatterplot* visualizations. * The *SGE* job runner has now been fully deprecated and replaced with *DRMAA*. * Several enhancements to aid with *reproducibility*: "Re-run" and "Extract workflow" validates datasets and tools, respectively, and a new data tables registry within the Administration menu, along with associated tools, corrects or warns about tool migration issues. * Highlights from the new Galaxy *CloudMan <http:"" cloud="">* release and /*December 2012 Galaxy Update <http:"" galaxyupdates="" 2012_12="">*/. ** ** ** new: $ hg clone galaxy-dist upgrade: $ hg pull -u -r f364d992270c * Thanks for using Galaxy!* The Galaxy Team <http:"" galaxy%20team=""> -- Jennifer Jackson
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