Question: December 3, 2012 Distribution & News Brief
0
Jennifer Hillman Jackson ♦ 25k wrote:
December 3, 2012 Distribution & News Brief
<http: wiki.galaxyproject.org="" news="" 2012_12_03_distributionnewsbrief="">
*
Complete News Brief
<http: wiki.galaxyproject.org="" devnewsbriefs="" 2012_12_03="">*
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Highlights:*
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*NGS: Mapping* tools *Bowtie
<http: bowtie-bio.sourceforge.net="" index.shtml="">* and *Lastz
<http: www.bx.psu.edu="" %7ersharris="" lastz=""/>* have moved from the
*Galaxy distribution <https: bitbucket.org="" galaxy="" galaxy-dist="">*
to
the *Galaxy Main Tool Shed <http: toolshed.g2.bx.psu.edu=""/>*.
*
Improvements in the display of *Tool Shed
<http: wiki.galaxyproject.org="" tool%20shed="">* repository
dependencies
and contents.
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More *Tool Shed <http: toolshed.g2.bx.psu.edu=""/>* updates
including
details of the Functional test framework
<http: wiki.galaxyproject.org="" hostingalocaltoolshed#functional_te="" st_framework_for_the_tool_shed="">,
a new hgweb.config file and HgWebConfigManager tool, plus other
management features.
*
Updated *UI* display and functionality for datasets and histories:
new *paused* state and "resume/paused" toggle, new *History menu
options*, and improved *Scatterplot* visualizations.
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The *SGE* job runner has now been fully deprecated and replaced
with
*DRMAA*.
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Several enhancements to aid with *reproducibility*: "Re-run" and
"Extract workflow" validates datasets and tools, respectively, and
a
new data tables registry within the Administration menu, along
with
associated tools, corrects or warns about tool migration issues.
*
Highlights from the new Galaxy *CloudMan
<http: usegalaxy.org="" cloud="">* release and /*December 2012 Galaxy
Update <http: wiki.galaxyproject.org="" galaxyupdates="" 2012_12="">*/.
*
http://getgalaxy.org*
*http://bitbucket.org/galaxy/galaxy-dist*
*http://galaxy-dist.readthedocs.org*
new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: $ hg pull -u -r f364d992270c
*
Thanks for using Galaxy!*
The Galaxy Team <http: wiki.galaxyproject.org="" galaxy%20team="">
--
Jennifer Jackson
http://galaxyproject.org