Question: May 11, 2012 Galaxy Development News Brief
0
Jennifer Hillman Jackson ♦ 25k wrote:
Dear Galaxy Community,
The May 11, 2012 Galaxy Distribution has been released at:
http://bitbucket.org/galaxy/galaxy-dist/
Complete News Brief
<http: wiki.g2.bx.psu.edu="" devnewsbriefs="" 2012_05_11="">
*Highlights:*
* *EMBOSS* tools and datatypes have now moved from the _/Galaxy
distribution/_ <http: bitbucket.org="" galaxy="" galaxy-dist=""/> to the
/Galaxy Main Tool Shed/ <http: toolshed.g2.bx.psu.edu="">.
* Tool Integration Tests
<http: wiki.g2.bx.psu.edu="" tool%20shed#using_galaxy.27s_functional_tes="" t_framework_to_test_tools_installed_into_your_local_galaxy_instance="">,
Custom Tool Panel Configuration
<http: wiki.g2.bx.psu.edu="" tool%20shed#managing_the_layout_of_your_gal="" axy_tool_panel="">,
and Configurable Tool Output Locations
<http: wiki.g2.bx.psu.edu="" admin="" tools="" multiple%20output%20files="">.
* Improved Multiprocess Job Handling
<http: wiki.g2.bx.psu.edu="" admin="" config="" performance="" web%20application%="" 20scaling="">
and Enhanced OpenID <http: openid.net=""> Support.
* GATK <http: www.broadinstitute.org="" gsa="" wiki=""> version 1.4,
FreeBayes <http: github.com="" ekg="" freebayes="">, Updated *Megablast* using
NCBI BLAST+ <http: blast.ncbi.nlm.nih.gov="" blast.cgi="">, Trinity
<http: trinityrnaseq.sourceforge.net="">, WormBase 2
<http: www.wormbase.org="">, and IGB <http: bioviz.org="" igb="" index.html="">
external display.
* Trackster <http: wiki.g2.bx.psu.edu="" learn="" visualization="">
upgrades include /strand coloring/, /interval datatype support/, and
/tabix indexing/ (fast!!).
* Updated *User Interface*, *Workflow-API* upgrades, and *Custom
UCSC Display*.
*http://getgalaxy.org*
*new*: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-
dist
*upgrade*: % hg pull -u -r 17d57db9a7c0
/Thanks for using Galaxy!/
Jennifer Jackson
Galaxy Team <http: wiki.g2.bx.psu.edu="" galaxy%20team="">
http://galaxyproject.org