Question: May 11, 2012 Galaxy Development News Brief
0
gravatar for Jennifer Hillman Jackson
6.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Dear Galaxy Community, The May 11, 2012 Galaxy Distribution has been released at: http://bitbucket.org/galaxy/galaxy-dist/ Complete News Brief <http: wiki.g2.bx.psu.edu="" devnewsbriefs="" 2012_05_11=""> *Highlights:* * *EMBOSS* tools and datatypes have now moved from the _/Galaxy distribution/_ <http: bitbucket.org="" galaxy="" galaxy-dist=""/> to the /Galaxy Main Tool Shed/ <http: toolshed.g2.bx.psu.edu="">. * Tool Integration Tests <http: wiki.g2.bx.psu.edu="" tool%20shed#using_galaxy.27s_functional_tes="" t_framework_to_test_tools_installed_into_your_local_galaxy_instance="">, Custom Tool Panel Configuration <http: wiki.g2.bx.psu.edu="" tool%20shed#managing_the_layout_of_your_gal="" axy_tool_panel="">, and Configurable Tool Output Locations <http: wiki.g2.bx.psu.edu="" admin="" tools="" multiple%20output%20files="">. * Improved Multiprocess Job Handling <http: wiki.g2.bx.psu.edu="" admin="" config="" performance="" web%20application%="" 20scaling=""> and Enhanced OpenID <http: openid.net=""> Support. * GATK <http: www.broadinstitute.org="" gsa="" wiki=""> version 1.4, FreeBayes <http: github.com="" ekg="" freebayes="">, Updated *Megablast* using NCBI BLAST+ <http: blast.ncbi.nlm.nih.gov="" blast.cgi="">, Trinity <http: trinityrnaseq.sourceforge.net="">, WormBase 2 <http: www.wormbase.org="">, and IGB <http: bioviz.org="" igb="" index.html=""> external display. * Trackster <http: wiki.g2.bx.psu.edu="" learn="" visualization=""> upgrades include /strand coloring/, /interval datatype support/, and /tabix indexing/ (fast!!). * Updated *User Interface*, *Workflow-API* upgrades, and *Custom UCSC Display*. *http://getgalaxy.org* *new*: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy- dist *upgrade*: % hg pull -u -r 17d57db9a7c0 /Thanks for using Galaxy!/ Jennifer Jackson Galaxy Team <http: wiki.g2.bx.psu.edu="" galaxy%20team=""> http://galaxyproject.org
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